
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 1:39.790m | 1:39.790m | |
| 2 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 1:39.961m | +0.171s | |
| 3 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:40.368m | +0.578s | |
| 4 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 1:40.541m | +0.751s | |
| 5 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 1:40.567m | +0.777s | |
| 6 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 1:40.711m | +0.921s | |
| 7 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:40.722m | +0.932s | |
| 8 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | 1:40.969m | +1.179s | |
| 9 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 1:41.079m | +1.289s | |
| 10 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:41.119m | +1.329s | |
| 11 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 1:41.225m | +1.435s | |
| 12 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 1:41.253m | +1.463s | |
| 13 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 1:41.273m | +1.483s | |
| 14 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:41.280m | +1.490s | |
| 15 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 1:41.286m | +1.496s | |
| 16 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 1:41.337m | +1.547s | |
| 17 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 1:41.354m | +1.564s | |
| 18 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 1:41.436m | +1.646s | |
| 19 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 1:41.547m | +1.757s | |
| 20 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 1:41.566m | +1.776s | |
| 21 | L. Loi | Livio Loi | Marc VDS Racing | Marc VDS Racing Team | 1:41.577m | +1.787s | |
| 22 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:41.588m | +1.798s | |
| 23 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 1:41.630m | +1.840s | |
| 24 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:41.653m | +1.863s | |
| 25 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 1:41.887m | +2.097s | |
| 26 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 1:41.974m | +2.184s | |
| 27 | J. Navarro | Jorge Navarro | Cuna de Camp. | Cuna de Campeones | 1:42.104m | +2.314s | |
| 28 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 1:42.371m | +2.581s | |
| 29 | LF Tascaracing | La Fonte Tascaracing | 1:42.537m | +2.747s | |||
| 30 | Ambrogio Racing | Ambrogio Racing | 1:42.570m | +2.780s | |||
| 31 | F. Alt | Florian Alt | Kiefer Racing | Kiefer Racing | 1:44.218m | +4.428s | |
| 32 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 1:44.463m | +4.673s | |
| 33 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | DNF | DNF | |
| 34 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | DNF | DNF |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |