
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 2:14.862m | 2:14.862m | |
| 2 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 2:14.902m | +0.040s | |
| 3 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 2:15.043m | +0.181s | |
| 4 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 2:15.065m | +0.203s | |
| 5 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 2:15.107m | +0.245s | |
| 6 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | 2:15.318m | +0.456s | |
| 7 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 2:15.318m | +0.456s | |
| 8 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 2:15.552m | +0.690s | |
| 9 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 2:15.579m | +0.717s | |
| 10 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 2:15.618m | +0.756s | |
| 11 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 2:15.638m | +0.776s | |
| 12 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 2:15.642m | +0.780s | |
| 13 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 2:15.649m | +0.787s | |
| 14 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 2:15.770m | +0.908s | |
| 15 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 2:16.014m | +1.152s | |
| 16 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 2:16.261m | +1.399s | |
| 17 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 2:16.332m | +1.470s | |
| 18 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 2:16.342m | +1.480s | |
| 19 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 2:16.404m | +1.542s | |
| 20 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 2:16.459m | +1.597s | |
| 21 | L. Loi | Livio Loi | Marc VDS Racing | Marc VDS Racing Team | 2:16.582m | +1.720s | |
| 22 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 2:16.675m | +1.813s | |
| 23 | H. Azmi | Hafiq Azmi | Touchl.-SIC-AJO | Touchline-SIC-AJO | 2:16.842m | +1.980s | |
| 24 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 2:16.973m | +2.111s | |
| 25 | Ambrogio Racing | Ambrogio Racing | 2:17.052m | +2.190s | |||
| 26 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 2:17.091m | +2.229s | |
| 27 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 2:17.176m | +2.314s | |
| 28 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 2:17.178m | +2.316s | |
| 29 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 2:17.322m | +2.460s | |
| 30 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 2:17.421m | +2.559s | |
| 31 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 2:18.056m | +3.194s | |
| 32 | A. Malik | Aizat Malik | Touchl.-SIC-AJO | Touchline-SIC-AJO | 2:18.218m | +3.356s | |
| 33 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 2:22.033m | +7.171s | |
| 34 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | DNF | DNF | |
| 35 | F. Alt | Florian Alt | Kiefer Racing | Kiefer Racing | DNF | DNF |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |