
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 2:09.489m | 2:09.489m | |
| 2 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 2:09.506m | +0.017s | |
| 3 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 2:09.936m | +0.447s | |
| 4 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 2:10.167m | +0.678s | |
| 5 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | 2:10.345m | +0.856s | |
| 6 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 2:10.360m | +0.871s | |
| 7 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | 2:10.480m | +0.991s | |
| 8 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 2:10.569m | +1.080s | |
| 9 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 2:10.666m | +1.177s | |
| 10 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 2:10.721m | +1.232s | |
| 11 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 2:10.854m | +1.365s | |
| 12 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 2:10.876m | +1.387s | |
| 13 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 2:10.903m | +1.414s | |
| 14 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 2:11.006m | +1.517s | |
| 15 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 2:11.011m | +1.522s | |
| 16 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 2:11.094m | +1.605s | |
| 17 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 2:11.388m | +1.899s | |
| 18 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 2:11.801m | +2.312s | |
| 19 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 2:11.860m | +2.371s | |
| 20 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 2:12.044m | +2.555s | |
| 21 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 2:12.058m | +2.569s | |
| 22 | L. Loi | Livio Loi | Marc VDS Racing | Marc VDS Racing Team | 2:12.061m | +2.572s | |
| 23 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 2:12.067m | +2.578s | |
| 24 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 2:12.099m | +2.610s | |
| 25 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 2:12.136m | +2.647s | |
| 26 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 2:12.272m | +2.783s | |
| 27 | A. Migno | Andrea Migno | GMT Racing | GMT Racing | 2:12.497m | +3.008s | |
| 28 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 2:12.512m | +3.023s | |
| 29 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 2:13.151m | +3.662s | |
| 30 | F. Alt | Florian Alt | Kiefer Racing | Kiefer Racing | 2:13.176m | +3.687s | |
| 31 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 2:13.401m | +3.912s | |
| 32 | Ambrogio Racing | Ambrogio Racing | 2:13.472m | +3.983s | |||
| 33 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 2:13.808m | +4.319s | |
| 34 | J. Danilo | Jules Danilo | Marc VDS Racing | Marc VDS Racing Team | 2:13.869m | +4.380s | |
| 35 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | DNF | DNF |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |