
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 1:58.328m | 1:58.328m | |
| 2 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 1:58.753m | +0.425s | |
| 3 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Gaviota Aspar Team | 1:59.128m | +0.800s | |
| 4 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:59.220m | +0.892s | |
| 5 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:59.498m | +1.170s | |
| 6 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 1:59.922m | +1.594s | |
| 7 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:59.987m | +1.659s | |
| 8 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 2:00.048m | +1.720s | |
| 9 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 2:00.229m | +1.901s | |
| 10 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 2:00.371m | +2.043s | |
| 11 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 2:00.378m | +2.050s | |
| 12 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | 2:00.435m | +2.107s | |
| 13 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 2:00.491m | +2.163s | |
| 14 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 2:00.683m | +2.355s | |
| 15 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 2:01.051m | +2.723s | |
| 16 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 2:01.071m | +2.743s | |
| 17 | E. Granado | Eric Granado | Aspar Team | CFMOTO Gaviota Aspar Team | 2:01.136m | +2.808s | |
| 18 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 2:01.179m | +2.851s | |
| 19 | D. Webb | Daniel Webb | Ambrogio Racing | Ambrogio Racing | 2:01.226m | +2.898s | |
| 20 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 2:01.255m | +2.927s | |
| 22 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 2:01.528m | +3.200s | |
| 23 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 2:01.534m | +3.206s | |
| 24 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 2:01.541m | +3.213s | |
| 25 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 2:01.571m | +3.243s | |
| 27 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 2:01.714m | +3.386s | |
| 28 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 2:01.763m | +3.435s | |
| 29 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 2:02.040m | +3.712s | |
| 30 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 2:02.256m | +3.928s | |
| 31 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 2:02.419m | +4.091s | |
| 33 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 2:02.752m | +4.424s | |
| 34 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | DNF | DNF |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |