
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | E. Vázquez | Efrén Vázquez | Peugeot MC Saxo | Peugeot MC Saxoprint | 1:42.847m | 1:42.847m | |
| 2 | I. Viñales | Isaac Viñales | Team Calvo | Team Calvo | 1:43.045m | +0.198s | |
| 3 | J. Miller | Jack Miller | RB KTM Ajo | Red Bull KTM Ajo | 1:43.100m | +0.253s | |
| 4 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:43.118m | +0.271s | |
| 5 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:43.215m | +0.368s | |
| 6 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:43.241m | +0.394s | |
| 7 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:43.250m | +0.403s | |
| 8 | A. Masbou | Alexis Masbou | Snipers Team | Rivacold Snipers Team | 1:43.322m | +0.475s | |
| 9 | D. Kent | Danny Kent | RB Husqvarna | Red Bull Husqvarna Ajo | 1:43.341m | +0.494s | |
| 10 | F. Bagnaia | Francesco Bagnaia | Sky Racing Team | Sky Racing Team VR46 | 1:43.425m | +0.578s | |
| 11 | R. Fenati | Romano Fenati | Sky Racing Team | Sky Racing Team VR46 | 1:43.622m | +0.775s | |
| 12 | J. Guevara | Juanfran Guevara | Aspar Team | CFMOTO Aspar Team | 1:43.645m | +0.798s | |
| 13 | J. McPhee | John McPhee | Peugeot MC Saxo | Peugeot MC Saxoprint | 1:43.738m | +0.891s | |
| 14 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:43.788m | +0.941s | |
| 15 | A. Tonucci | Alessandro Tonucci | CIP-Green | CIP Green Power | 1:43.795m | +0.948s | |
| 16 | N. Antonelli | Niccolò Antonelli | Junior GO&FUN | Junior Team GO&FUN Moto3 | 1:43.820m | +0.973s | |
| 17 | Z. Khairuddin | Zulfahmi Khairuddin | Ongnetta-AirA | Ongnetta-AirAsia | 1:43.870m | +1.023s | |
| 18 | H. Azmi | Hafiq Azmi | SIC-AJO | SIC-AJO | 1:43.974m | +1.127s | |
| 19 | A. Sissis | Arthur Sissis | Mahindra Racing | Mahindra Racing | 1:44.019m | +1.172s | |
| 20 | E. Bastianini | Enea Bastianini | Junior GO&FUN | Junior Team GO&FUN Moto3 | 1:44.037m | +1.190s | |
| 21 | L. Loi | Livio Loi | Marc VDS Racing | Marc VDS Racing Team | 1:44.067m | +1.220s | |
| 22 | K. Hanika | Karel Hanika | RB KTM Ajo | Red Bull KTM Ajo | 1:44.190m | +1.343s | |
| 23 | L. Grünwald | Luca Grünwald | Kiefer Racing | Kiefer Racing | 1:44.370m | +1.523s | |
| 24 | J. Kornfeil | Jakub Kornfeil | Team Calvo | Team Calvo | 1:44.409m | +1.562s | |
| 25 | M. Ferrari | Matteo Ferrari | San Carlo Team | San Carlo Team Italia | 1:44.487m | +1.640s | |
| 26 | P. Öttl | Philipp Öttl | Interwetten Pad | Interwetten Paddock Moto3 | 1:44.676m | +1.829s | |
| 27 | B. Schouten | Bryan Schouten | CIP-Green | CIP Green Power | 1:44.677m | +1.830s | |
| 28 | S. Deroue | Scott Deroue | RW Racing GP | RW Racing GP | 1:45.142m | +2.295s | |
| 29 | M. Rinaldi | Michael Ruben Rinaldi | San Carlo Team | San Carlo Team Italia | 1:45.447m | +2.600s | |
| 30 | J. Danilo | Jules Danilo | Ambrogio Racing | Ambrogio Racing | 1:45.645m | +2.798s | |
| 31 | A. Carrasco | Ana Carrasco | RW Racing GP | RW Racing GP | 1:45.767m | +2.920s | |
| 32 | E. Granado | Eric Granado | Team Calvo | Team Calvo | 1:46.034m | +3.187s | |
| 33 | G. Ramos | Gabriel Ramos | Kiefer Racing | Kiefer Racing | 1:46.732m | +3.885s |
| Aragon GP | 26.09. - 28.09. | |
| Japan GP | 10.10. - 12.10. | |
| Phillip Island | 17.10. - 19.10. | |
| Sepang | 24.10. - 26.10. | |
| Valencia | 07.11. - 09.11. |