
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 1:43.696m | 1:43.696m | |
| 2 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:43.806m | +0.110s | |
| 3 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 1:43.969m | +0.273s | |
| 4 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:44.123m | +0.427s | |
| 5 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 1:44.178m | +0.482s | |
| 6 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 1:44.278m | +0.582s | |
| 7 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:44.320m | +0.624s | |
| 8 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 1:44.548m | +0.852s | |
| 9 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:44.560m | +0.864s | |
| 10 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 1:44.600m | +0.904s | |
| 11 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 1:44.611m | +0.915s | |
| 12 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:44.737m | +1.041s | |
| 13 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:44.764m | +1.068s | |
| 14 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 1:44.812m | +1.116s | |
| 15 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 1:44.836m | +1.140s | |
| 16 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | 1:44.845m | +1.149s | |
| 17 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:44.872m | +1.176s | |
| 18 | D. Webb | Daniel Webb | Ambrogio Racing | Ambrogio Racing | 1:44.889m | +1.193s | |
| 19 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 1:45.370m | +1.674s | |
| 20 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 1:45.381m | +1.685s | |
| 22 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 1:45.574m | +1.878s | |
| 23 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 1:45.574m | +1.878s | |
| 24 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 1:45.658m | +1.962s | |
| 25 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 1:45.719m | +2.023s | |
| 27 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 1:45.755m | +2.059s | |
| 28 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 1:45.819m | +2.123s | |
| 29 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 1:45.865m | +2.169s | |
| 30 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 1:45.911m | +2.215s | |
| 31 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 1:46.550m | +2.854s | |
| 32 | F. Alt | Florian Alt | Kiefer Racing | Kiefer Racing | 1:46.562m | +2.866s | |
| 33 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 1:46.564m | +2.868s | |
| 35 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | DNF | DNF |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |