
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 1:44.724m | 1:44.724m | |
| 2 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 1:44.862m | +0.138s | |
| 3 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:45.099m | +0.375s | |
| 4 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:45.417m | +0.693s | |
| 5 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:45.485m | +0.761s | |
| 6 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:45.559m | +0.835s | |
| 7 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 1:45.646m | +0.922s | |
| 8 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 1:45.692m | +0.968s | |
| 9 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 1:45.779m | +1.055s | |
| 10 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 1:45.832m | +1.108s | |
| 11 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:45.846m | +1.122s | |
| 12 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 1:46.019m | +1.295s | |
| 13 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 1:46.076m | +1.352s | |
| 14 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:46.137m | +1.413s | |
| 15 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:46.152m | +1.428s | |
| 17 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 1:46.188m | +1.464s | |
| 18 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 1:46.252m | +1.528s | |
| 19 | D. Webb | Daniel Webb | Ambrogio Racing | Ambrogio Racing | 1:46.357m | +1.633s | |
| 21 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | 1:46.429m | +1.705s | |
| 22 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 1:46.435m | +1.711s | |
| 23 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 1:46.554m | +1.830s | |
| 24 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 1:46.640m | +1.916s | |
| 25 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 1:46.696m | +1.972s | |
| 26 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 1:46.734m | +2.010s | |
| 27 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 1:46.804m | +2.080s | |
| 28 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 1:47.202m | +2.478s | |
| 29 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 1:47.436m | +2.712s | |
| 30 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 1:47.473m | +2.749s | |
| 31 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 1:47.659m | +2.935s | |
| 32 | F. Alt | Florian Alt | Kiefer Racing | Kiefer Racing | 1:48.537m | +3.813s | |
| 33 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 1:48.734m | +4.010s | |
| 35 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | DNF | DNF |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |