
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:44.147m | 1:44.147m | |
| 2 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 1:44.153m | +0.006s | |
| 3 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 1:44.678m | +0.531s | |
| 4 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 1:44.823m | +0.676s | |
| 5 | D. Webb | Daniel Webb | Ambrogio Racing | Ambrogio Racing | 1:45.073m | +0.926s | |
| 6 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:45.142m | +0.995s | |
| 7 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:45.176m | +1.029s | |
| 8 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | 1:45.343m | +1.196s | |
| 9 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:45.400m | +1.253s | |
| 10 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 1:45.409m | +1.262s | |
| 11 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 1:45.498m | +1.351s | |
| 12 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 1:45.546m | +1.399s | |
| 13 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 1:45.564m | +1.417s | |
| 14 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:45.782m | +1.635s | |
| 15 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:45.988m | +1.841s | |
| 16 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 1:46.116m | +1.969s | |
| 18 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 1:46.174m | +2.027s | |
| 19 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 1:46.264m | +2.117s | |
| 21 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:46.410m | +2.263s | |
| 22 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 1:46.610m | +2.463s | |
| 23 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 1:46.622m | +2.475s | |
| 24 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 1:46.678m | +2.531s | |
| 25 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 1:46.967m | +2.820s | |
| 26 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 1:47.018m | +2.871s | |
| 27 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | 1:47.049m | +2.902s | |
| 28 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 1:47.056m | +2.909s | |
| 29 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 1:47.112m | +2.965s | |
| 30 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 1:47.292m | +3.145s | |
| 32 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 1:47.533m | +3.386s | |
| 33 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 1:47.581m | +3.434s | |
| 34 | F. Alt | Florian Alt | Kiefer Racing | Kiefer Racing | 1:48.299m | +4.152s | |
| 35 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 1:48.460m | +4.313s |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |