
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | Á. Rins | Álex Rins | 1:57.507m | 1:57.507m | |||
| 1 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:57.507m | 1:57.507m | |
| 2 | S. Cortese | Sandro Cortese | Red Bull Ajo | Red Bull Ajo Motorsport | 1:57.519m | +0.012s | |
| 3 | M. Oliveira | Miguel Oliveira | 1:57.975m | +0.468s | |||
| 3 | M. Oliveira | Miguel Oliveira | Estrella Gal. | Estrella Galicia 0'0 | 1:57.975m | +0.468s | |
| 4 | A. Masbou | Alexis Masbou | Elba-Caretta | Elba-Caretta Technology | 1:58.301m | +0.794s | |
| 4 | A. Masbou | Alexis Masbou | 1:58.301m | +0.794s | |||
| 5 | J. Kornfeil | Jakub Kornfeil | Redox-Ongetta-C | Redox-Ongetta-Centro Seta | 1:58.438m | +0.931s | |
| 6 | J. Miller | Jack Miller | 1:58.793m | +1.286s | |||
| 6 | J. Miller | Jack Miller | Elba-Caretta | Elba-Caretta Technology | 1:58.793m | +1.286s | |
| 7 | I. Viñales | Isaac Viñales | Ongetta-Centro | Ongetta-Centro Seta | 1:58.911m | +1.404s | |
| 8 | A. Sissis | Arthur Sissis | Red Bull Ajo | Red Bull Ajo Motorsport | 1:59.023m | +1.516s | |
| 9 | M. Viñales | Maverick Viñales | Blusens Avintia | Blusens Avintia | 1:59.101m | +1.594s | |
| 10 | R. Fenati | Romano Fenati | 3570-MTA | 3570-MTA | 1:59.155m | +1.648s | |
| 11 | E. Vázquez | Efrén Vázquez | JHK T-Shirt | JHK T-Shirt Laglisse | 1:59.198m | +1.691s | |
| 12 | L. Rossi | Louis Rossi | Team Germany | Racing Team Germany | 1:59.450m | +1.943s | |
| 13 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:59.500m | +1.993s | |
| 14 | A. Martin | Adrian Martin | JHK T-Shirt | JHK T-Shirt Laglisse | 1:59.729m | +2.222s | |
| 15 | D. Kent | Danny Kent | Red Bull Ajo | Red Bull Ajo Motorsport | 1:59.859m | +2.352s | |
| 16 | H. Faubel | Hector Faubel | Bankia Aspar | Bankia Aspar Team | 1:59.925m | +2.418s | |
| 17 | N. Antonelli | Niccolò Antonelli | San Carlo Gre. | San Carlo Gresini Moto3 | 2:00.009m | +2.502s | |
| 18 | J. Rodriguez | Josep Rodriguez | Wild Wolf BST | Wild Wolf BST | 2:00.312m | +2.805s | |
| 18 | J. Rodriguez | Josep Rodriguez | 2:00.312m | +2.805s | |||
| 19 | L. Salom | Luis Salom | RW Racing GP | RW Racing GP | 2:00.391m | +2.884s | |
| 20 | A. Moncayo | Alberto Moncayo | Bankia Aspar | Bankia Aspar Team | 2:01.153m | +3.646s | |
| 21 | D. Webb | Daniel Webb | Mahindra Racing | Mahindra Racing | 2:01.191m | +3.684s | |
| 22 | K. Fuji | Kenta Fuji | Technomag | Technomag-CIP-TSR | 2:01.281m | +3.774s | |
| 23 | I. Moreno | Ivan Moreno | Andalucia JHK | Andalucia JHK Laglisse | 2:01.319m | +3.812s | |
| 24 | A. Tonucci | Alessandro Tonucci | 3570-MTA | 3570-MTA | 2:01.364m | +3.857s | |
| 25 | M. Schrötter | Marcel Schrötter | Mahindra Racing | Mahindra Racing | 2:01.450m | +3.943s | |
| 26 | B. Binder | Brad Binder | RW Racing GP | RW Racing GP | 2:01.477m | +3.970s | |
| 27 | N. Ajo | Niklas Ajo | TT Motion Ev. | TT Motion Events Racing | 2:01.702m | +4.195s | |
| 28 | Z. Khairuddin | Zulfahmi Khairuddin | Airasia-Sic-Ajo | Airasia-Sic-Ajo | 2:01.752m | +4.245s | |
| 29 | J. Iwema | Jasper Iwema | Moto FGR | Moto FGR | 2:02.499m | +4.992s | |
| 30 | T. Finsterbusch | Toni Finsterbusch | MZ Racing | Cresto Guide MZ Racing | 2:02.737m | +5.230s | |
| 31 | S. Grotzki Giorgi | Simone Grotzki Giorgi | Ambrogio Next | Ambrogio Next Racing | 2:03.041m | +5.534s | |
| 32 | L. Morciano | Luigi Morciano | Ioda Team Itali | Ioda Team Italia | 2:03.055m | +5.548s | |
| 33 | G. Pedone | Giulian Pedone | Ambrogio Next | Ambrogio Next Racing | 2:03.123m | +5.616s | |
| 34 | A. Techer | Alan Techer | Technomag | Technomag-CIP-TSR | DNF | DNF |
| Aragon GP | 28.09. - 30.09. | |
| Japan GP | 12.10. - 14.10. | |
| Sepang | 19.10. - 21.10. | |
| Phillip Island | 26.10. - 28.10. | |
| Valencia | 09.11. - 11.11. |