
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | R. Fenati | Romano Fenati | 3570-MTA | 3570-MTA | 1:49.760m | 1:49.760m | |
| 2 | M. Viñales | Maverick Viñales | Blusens Avintia | Blusens Avintia | 1:50.008m | +0.248s | |
| 3 | S. Cortese | Sandro Cortese | Red Bull Ajo | Red Bull Ajo Motorsport | 1:50.238m | +0.478s | |
| 4 | M. Oliveira | Miguel Oliveira | Estrella Gal. | Estrella Galicia 0'0 | 1:50.617m | +0.857s | |
| 4 | M. Oliveira | Miguel Oliveira | 1:50.617m | +0.857s | |||
| 5 | L. Salom | Luis Salom | RW Racing GP | RW Racing GP | 1:50.725m | +0.965s | |
| 6 | H. Faubel | Hector Faubel | Bankia Aspar | Bankia Aspar Team | 1:50.728m | +0.968s | |
| 7 | A. Sissis | Arthur Sissis | Red Bull Ajo | Red Bull Ajo Motorsport | 1:50.812m | +1.052s | |
| 8 | D. Kent | Danny Kent | Red Bull Ajo | Red Bull Ajo Motorsport | 1:50.928m | +1.168s | |
| 9 | J. Kornfeil | Jakub Kornfeil | Redox-Ongetta-C | Redox-Ongetta-Centro Seta | 1:51.016m | +1.256s | |
| 10 | A. Moncayo | Alberto Moncayo | Bankia Aspar | Bankia Aspar Team | 1:51.075m | +1.315s | |
| 11 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:51.076m | +1.316s | |
| 12 | L. Rossi | Louis Rossi | Team Germany | Racing Team Germany | 1:51.100m | +1.340s | |
| 13 | N. Antonelli | Niccolò Antonelli | San Carlo Gre. | San Carlo Gresini Moto3 | 1:51.140m | +1.380s | |
| 14 | Á. Rins | Álex Rins | 1:51.200m | +1.440s | |||
| 14 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:51.200m | +1.440s | |
| 15 | N. Ajo | Niklas Ajo | TT Motion Ev. | TT Motion Events Racing | 1:51.413m | +1.653s | |
| 16 | A. Tonucci | Alessandro Tonucci | 3570-MTA | 3570-MTA | 1:51.446m | +1.686s | |
| 17 | J. Iwema | Jasper Iwema | Moto FGR | Moto FGR | 1:51.631m | +1.871s | |
| 18 | B. Binder | Brad Binder | RW Racing GP | RW Racing GP | 1:51.713m | +1.953s | |
| 19 | A. Masbou | Alexis Masbou | Elba-Caretta | Elba-Caretta Technology | 1:51.864m | +2.104s | |
| 19 | A. Masbou | Alexis Masbou | 1:51.864m | +2.104s | |||
| 20 | Z. Khairuddin | Zulfahmi Khairuddin | Airasia-Sic-Ajo | Airasia-Sic-Ajo | 1:51.954m | +2.194s | |
| 21 | A. Techer | Alan Techer | Technomag | Technomag-CIP-TSR | 1:52.131m | +2.371s | |
| 22 | D. Webb | Daniel Webb | Mahindra Racing | Mahindra Racing | 1:52.193m | +2.433s | |
| 23 | I. Viñales | Isaac Viñales | Ongetta-Centro | Ongetta-Centro Seta | 1:52.253m | +2.493s | |
| 24 | K. Fuji | Kenta Fuji | Technomag | Technomag-CIP-TSR | 1:52.586m | +2.826s | |
| 25 | J. Miller | Jack Miller | Elba-Caretta | Elba-Caretta Technology | 1:52.980m | +3.220s | |
| 25 | J. Miller | Jack Miller | 1:52.980m | +3.220s | |||
| 26 | M. Schrötter | Marcel Schrötter | Mahindra Racing | Mahindra Racing | 1:53.080m | +3.320s | |
| 27 | S. Grotzki Giorgi | Simone Grotzki Giorgi | Ambrogio Next | Ambrogio Next Racing | 1:53.237m | +3.477s | |
| 28 | A. Martin | Adrian Martin | JHK T-Shirt | JHK T-Shirt Laglisse | 1:53.323m | +3.563s | |
| 29 | I. Moreno | Ivan Moreno | Andalucia JHK | Andalucia JHK Laglisse | 1:53.429m | +3.669s | |
| 30 | E. Vázquez | Efrén Vázquez | JHK T-Shirt | JHK T-Shirt Laglisse | 1:53.533m | +3.773s | |
| 31 | T. Finsterbusch | Toni Finsterbusch | MZ Racing | Cresto Guide MZ Racing | 1:54.557m | +4.797s | |
| 32 | J. Rodriguez | Josep Rodriguez | 1:54.993m | +5.233s | |||
| 32 | J. Rodriguez | Josep Rodriguez | Wild Wolf BST | Wild Wolf BST | 1:54.993m | +5.233s | |
| 33 | G. Pedone | Giulian Pedone | Ambrogio Next | Ambrogio Next Racing | 1:56.565m | +6.805s | |
| 34 | L. Morciano | Luigi Morciano | Ioda Team Itali | Ioda Team Italia | 1:57.241m | +7.481s |
| Aragon GP | 28.09. - 30.09. | |
| Japan GP | 12.10. - 14.10. | |
| Sepang | 19.10. - 21.10. | |
| Phillip Island | 26.10. - 28.10. | |
| Valencia | 09.11. - 11.11. |