
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:47.626m | 1:47.626m | |
| 2 | E. Vázquez | Efrén Vázquez | Peugeot MC Saxo | Peugeot MC Saxoprint | 1:47.678m | +0.052s | |
| 3 | J. Kornfeil | Jakub Kornfeil | Team Calvo | Team Calvo | 1:47.778m | +0.152s | |
| 4 | J. Miller | Jack Miller | RB KTM Ajo | Red Bull KTM Ajo | 1:47.908m | +0.282s | |
| 5 | R. Fenati | Romano Fenati | Sky Racing Team | Sky Racing Team VR46 | 1:47.924m | +0.298s | |
| 6 | I. Viñales | Isaac Viñales | Team Calvo | Team Calvo | 1:47.989m | +0.363s | |
| 7 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:48.025m | +0.399s | |
| 8 | J. Guevara | Juanfran Guevara | Aspar Team | CFMOTO Aspar Team | 1:48.090m | +0.464s | |
| 9 | J. McPhee | John McPhee | Peugeot MC Saxo | Peugeot MC Saxoprint | 1:48.169m | +0.543s | |
| 10 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:48.190m | +0.564s | |
| 11 | D. Kent | Danny Kent | RB Husqvarna | Red Bull Husqvarna Ajo | 1:48.195m | +0.569s | |
| 12 | L. Loi | Livio Loi | Marc VDS Racing | Marc VDS Racing Team | 1:48.268m | +0.642s | |
| 13 | E. Bastianini | Enea Bastianini | Junior GO&FUN | Junior Team GO&FUN Moto3 | 1:48.384m | +0.758s | |
| 14 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:48.433m | +0.807s | |
| 15 | K. Hanika | Karel Hanika | RB KTM Ajo | Red Bull KTM Ajo | 1:48.441m | +0.815s | |
| 16 | A. Masbou | Alexis Masbou | Snipers Team | Rivacold Snipers Team | 1:48.510m | +0.884s | |
| 17 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:48.649m | +1.023s | |
| 18 | G. Rodrigo | Gabriel Rodrigo | BOE Owlride | BOE Owlride | 1:48.656m | +1.030s | |
| 19 | N. Antonelli | Niccolò Antonelli | Junior GO&FUN | Junior Team GO&FUN Moto3 | 1:48.670m | +1.044s | |
| 20 | Z. Khairuddin | Zulfahmi Khairuddin | Ongnetta-AirA | Ongnetta-AirAsia | 1:48.778m | +1.152s | |
| 21 | F. Bagnaia | Francesco Bagnaia | Sky Racing Team | Sky Racing Team VR46 | 1:48.795m | +1.169s | |
| 22 | M. Herrera | Maria Herrera | Jun. Estrella | Junior Team Estrella Galicia | 1:48.820m | +1.194s | |
| 23 | M. Ramírez | Marcos Ramírez | Calvo Laglisse | Calvo Team Laglisse | 1:48.946m | +1.320s | |
| 24 | S. Deroue | Scott Deroue | RW Racing GP | RW Racing GP | 1:48.972m | +1.346s | |
| 25 | P. Öttl | Philipp Öttl | Interwetten Pad | Interwetten Paddock Moto3 | 1:48.996m | +1.370s | |
| 26 | E. Granado | Eric Granado | Team Calvo | Team Calvo | 1:49.146m | +1.520s | |
| 27 | A. Tonucci | Alessandro Tonucci | CIP-Green | CIP Green Power | 1:49.173m | +1.547s | |
| 28 | A. Sissis | Arthur Sissis | Mahindra Racing | Mahindra Racing | 1:49.203m | +1.577s | |
| 29 | B. Schouten | Bryan Schouten | CIP-Green | CIP Green Power | 1:49.373m | +1.747s | |
| 30 | M. Ferrari | Matteo Ferrari | San Carlo Team | San Carlo Team Italia | 1:49.517m | +1.891s | |
| 31 | J. Danilo | Jules Danilo | Ambrogio Racing | Ambrogio Racing | 1:49.668m | +2.042s | |
| 32 | L. Grünwald | Luca Grünwald | Kiefer Racing | Kiefer Racing | 1:49.976m | +2.350s | |
| 33 | A. Carrasco | Ana Carrasco | RW Racing GP | RW Racing GP | 1:50.509m | +2.883s | |
| 34 | G. Ramos | Gabriel Ramos | Kiefer Racing | Kiefer Racing | 1:50.689m | +3.063s | |
| 35 | H. Azmi | Hafiq Azmi | SIC-AJO | SIC-AJO | DNF | DNF |
| Aragon GP | 26.09. - 28.09. | |
| Japan GP | 10.10. - 12.10. | |
| Phillip Island | 17.10. - 19.10. | |
| Sepang | 24.10. - 26.10. | |
| Valencia | 07.11. - 09.11. |