
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | I. Viñales | Isaac Viñales | Team Calvo | Team Calvo | 1:47.388m | 1:47.388m | |
| 2 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:47.699m | +0.311s | |
| 3 | J. Kornfeil | Jakub Kornfeil | Team Calvo | Team Calvo | 1:47.843m | +0.455s | |
| 4 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:48.181m | +0.793s | |
| 5 | R. Fenati | Romano Fenati | Sky Racing Team | Sky Racing Team VR46 | 1:48.367m | +0.979s | |
| 6 | E. Vázquez | Efrén Vázquez | Peugeot MC Saxo | Peugeot MC Saxoprint | 1:48.457m | +1.069s | |
| 7 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:48.477m | +1.089s | |
| 8 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:48.532m | +1.144s | |
| 9 | P. Öttl | Philipp Öttl | Interwetten Pad | Interwetten Paddock Moto3 | 1:48.734m | +1.346s | |
| 10 | D. Kent | Danny Kent | RB Husqvarna | Red Bull Husqvarna Ajo | 1:48.742m | +1.354s | |
| 11 | L. Loi | Livio Loi | Marc VDS Racing | Marc VDS Racing Team | 1:48.780m | +1.392s | |
| 12 | J. Miller | Jack Miller | RB KTM Ajo | Red Bull KTM Ajo | 1:48.793m | +1.405s | |
| 13 | J. Guevara | Juanfran Guevara | Aspar Team | CFMOTO Aspar Team | 1:48.854m | +1.466s | |
| 14 | E. Granado | Eric Granado | Team Calvo | Team Calvo | 1:48.885m | +1.497s | |
| 15 | J. McPhee | John McPhee | Peugeot MC Saxo | Peugeot MC Saxoprint | 1:48.909m | +1.521s | |
| 16 | N. Antonelli | Niccolò Antonelli | Junior GO&FUN | Junior Team GO&FUN Moto3 | 1:49.021m | +1.633s | |
| 17 | E. Bastianini | Enea Bastianini | Junior GO&FUN | Junior Team GO&FUN Moto3 | 1:49.143m | +1.755s | |
| 18 | M. Herrera | Maria Herrera | Jun. Estrella | Junior Team Estrella Galicia | 1:49.220m | +1.832s | |
| 19 | A. Masbou | Alexis Masbou | Snipers Team | Rivacold Snipers Team | 1:49.240m | +1.852s | |
| 20 | H. Azmi | Hafiq Azmi | SIC-AJO | SIC-AJO | 1:49.419m | +2.031s | |
| 21 | A. Tonucci | Alessandro Tonucci | CIP-Green | CIP Green Power | 1:49.466m | +2.078s | |
| 22 | A. Sissis | Arthur Sissis | Mahindra Racing | Mahindra Racing | 1:49.468m | +2.080s | |
| 23 | F. Bagnaia | Francesco Bagnaia | Sky Racing Team | Sky Racing Team VR46 | 1:49.747m | +2.359s | |
| 24 | L. Grünwald | Luca Grünwald | Kiefer Racing | Kiefer Racing | 1:49.792m | +2.404s | |
| 25 | M. Ramírez | Marcos Ramírez | Calvo Laglisse | Calvo Team Laglisse | 1:49.898m | +2.510s | |
| 26 | M. Ferrari | Matteo Ferrari | San Carlo Team | San Carlo Team Italia | 1:50.063m | +2.675s | |
| 27 | Z. Khairuddin | Zulfahmi Khairuddin | Ongnetta-AirA | Ongnetta-AirAsia | 1:50.105m | +2.717s | |
| 28 | J. Danilo | Jules Danilo | Ambrogio Racing | Ambrogio Racing | 1:50.206m | +2.818s | |
| 29 | B. Schouten | Bryan Schouten | CIP-Green | CIP Green Power | 1:50.357m | +2.969s | |
| 30 | S. Deroue | Scott Deroue | RW Racing GP | RW Racing GP | 1:50.377m | +2.989s | |
| 31 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:50.927m | +3.539s | |
| 32 | G. Rodrigo | Gabriel Rodrigo | BOE Owlride | BOE Owlride | 1:51.099m | +3.711s | |
| 33 | G. Ramos | Gabriel Ramos | Kiefer Racing | Kiefer Racing | 1:52.155m | +4.767s | |
| 34 | A. Carrasco | Ana Carrasco | RW Racing GP | RW Racing GP | 1:52.201m | +4.813s | |
| 35 | K. Hanika | Karel Hanika | RB KTM Ajo | Red Bull KTM Ajo | DNF | DNF |
| Aragon GP | 26.09. - 28.09. | |
| Japan GP | 10.10. - 12.10. | |
| Phillip Island | 17.10. - 19.10. | |
| Sepang | 24.10. - 26.10. | |
| Valencia | 07.11. - 09.11. |