
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:46.938m | 1:46.938m | |
| 2 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 1:47.051m | +0.113s | |
| 3 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 1:47.347m | +0.409s | |
| 4 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 1:47.451m | +0.513s | |
| 5 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:47.453m | +0.515s | |
| 6 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 1:47.515m | +0.577s | |
| 7 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:47.595m | +0.657s | |
| 8 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 1:47.749m | +0.811s | |
| 9 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:48.023m | +1.085s | |
| 10 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:48.081m | +1.143s | |
| 11 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 1:48.165m | +1.227s | |
| 12 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 1:48.179m | +1.241s | |
| 13 | D. Webb | Daniel Webb | Ambrogio Racing | Ambrogio Racing | 1:48.239m | +1.301s | |
| 14 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 1:48.253m | +1.315s | |
| 15 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:48.333m | +1.395s | |
| 16 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 1:48.418m | +1.480s | |
| 17 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 1:48.554m | +1.616s | |
| 18 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 1:48.580m | +1.642s | |
| 19 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 1:48.634m | +1.696s | |
| 20 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | 1:48.762m | +1.824s | |
| 21 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 1:49.067m | +2.129s | |
| 22 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | 1:49.106m | +2.168s | |
| 23 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 1:49.363m | +2.425s | |
| 24 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 1:49.490m | +2.552s | |
| 25 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 1:49.522m | +2.584s | |
| 26 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 1:49.608m | +2.670s | |
| 27 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 1:49.663m | +2.725s | |
| 29 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:49.736m | +2.798s | |
| 31 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 1:49.840m | +2.902s | |
| 32 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 1:49.864m | +2.926s | |
| 33 | F. Alt | Florian Alt | Kiefer Racing | Kiefer Racing | 1:49.945m | +3.007s | |
| 34 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 1:51.552m | +4.614s |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |