
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 1:48.443m | 1:48.443m | |
| 2 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 1:48.710m | +0.267s | |
| 3 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:48.728m | +0.285s | |
| 4 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:48.788m | +0.345s | |
| 5 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:48.861m | +0.418s | |
| 6 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 1:48.942m | +0.499s | |
| 7 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 1:49.175m | +0.732s | |
| 8 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 1:49.424m | +0.981s | |
| 9 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | 1:49.430m | +0.987s | |
| 10 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:49.489m | +1.046s | |
| 11 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 1:49.651m | +1.208s | |
| 12 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:49.695m | +1.252s | |
| 13 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 1:49.708m | +1.265s | |
| 14 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 1:49.961m | +1.518s | |
| 15 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 1:50.008m | +1.565s | |
| 16 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 1:50.012m | +1.569s | |
| 17 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 1:50.165m | +1.722s | |
| 18 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | 1:50.296m | +1.853s | |
| 19 | D. Webb | Daniel Webb | Ambrogio Racing | Ambrogio Racing | 1:50.356m | +1.913s | |
| 20 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:50.608m | +2.165s | |
| 21 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 1:50.656m | +2.213s | |
| 23 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 1:51.196m | +2.753s | |
| 24 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 1:51.569m | +3.126s | |
| 25 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 1:51.738m | +3.295s | |
| 26 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 1:51.811m | +3.368s | |
| 27 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 1:51.989m | +3.546s | |
| 29 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 1:52.359m | +3.916s | |
| 30 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 1:52.364m | +3.921s | |
| 31 | F. Alt | Florian Alt | Kiefer Racing | Kiefer Racing | 1:52.386m | +3.943s | |
| 32 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 1:52.399m | +3.956s | |
| 33 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | 1:53.156m | +4.713s | |
| 35 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | DNF | DNF |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |