
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | E. Vázquez | Efrén Vázquez | Peugeot MC Saxo | Peugeot MC Saxoprint | 1:49.366m | 1:49.366m | |
| 2 | J. Miller | Jack Miller | RB KTM Ajo | Red Bull KTM Ajo | 1:49.595m | +0.229s | |
| 3 | A. Masbou | Alexis Masbou | Snipers Team | Rivacold Snipers Team | 1:49.751m | +0.385s | |
| 4 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:49.875m | +0.509s | |
| 5 | I. Viñales | Isaac Viñales | Team Calvo | Team Calvo | 1:49.966m | +0.600s | |
| 6 | J. McPhee | John McPhee | Peugeot MC Saxo | Peugeot MC Saxoprint | 1:49.995m | +0.629s | |
| 7 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:50.006m | +0.640s | |
| 8 | N. Antonelli | Niccolò Antonelli | Junior GO&FUN | Junior Team GO&FUN Moto3 | 1:50.051m | +0.685s | |
| 9 | D. Kent | Danny Kent | RB Husqvarna | Red Bull Husqvarna Ajo | 1:50.150m | +0.784s | |
| 10 | L. Loi | Livio Loi | Marc VDS Racing | Marc VDS Racing Team | 1:50.177m | +0.811s | |
| 11 | J. Guevara | Juanfran Guevara | Aspar Team | CFMOTO Aspar Team | 1:50.231m | +0.865s | |
| 12 | E. Bastianini | Enea Bastianini | Junior GO&FUN | Junior Team GO&FUN Moto3 | 1:50.295m | +0.929s | |
| 13 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:50.322m | +0.956s | |
| 14 | H. Azmi | Hafiq Azmi | SIC-AJO | SIC-AJO | 1:50.341m | +0.975s | |
| 15 | R. Fenati | Romano Fenati | Sky Racing Team | Sky Racing Team VR46 | 1:50.355m | +0.989s | |
| 16 | F. Bagnaia | Francesco Bagnaia | Sky Racing Team | Sky Racing Team VR46 | 1:50.382m | +1.016s | |
| 17 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:50.391m | +1.025s | |
| 18 | J. Kornfeil | Jakub Kornfeil | Team Calvo | Team Calvo | 1:50.419m | +1.053s | |
| 19 | K. Hanika | Karel Hanika | RB KTM Ajo | Red Bull KTM Ajo | 1:50.676m | +1.310s | |
| 20 | Z. Khairuddin | Zulfahmi Khairuddin | Ongnetta-AirA | Ongnetta-AirAsia | 1:50.858m | +1.492s | |
| 21 | A. Tonucci | Alessandro Tonucci | CIP-Green | CIP Green Power | 1:50.905m | +1.539s | |
| 22 | B. Schouten | Bryan Schouten | CIP-Green | CIP Green Power | 1:50.906m | +1.540s | |
| 23 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:50.958m | +1.592s | |
| 24 | L. Grünwald | Luca Grünwald | Kiefer Racing | Kiefer Racing | 1:51.098m | +1.732s | |
| 25 | E. Granado | Eric Granado | Team Calvo | Team Calvo | 1:51.118m | +1.752s | |
| 26 | A. Locatelli | Andrea Locatelli | San Carlo Team | San Carlo Team Italia | 1:51.142m | +1.776s | |
| 27 | M. Ferrari | Matteo Ferrari | San Carlo Team | San Carlo Team Italia | 1:51.199m | +1.833s | |
| 28 | S. Deroue | Scott Deroue | RW Racing GP | RW Racing GP | 1:51.715m | +2.349s | |
| 29 | A. Carrasco | Ana Carrasco | RW Racing GP | RW Racing GP | 1:51.725m | +2.359s | |
| 30 | J. Danilo | Jules Danilo | Ambrogio Racing | Ambrogio Racing | 1:51.848m | +2.482s | |
| 31 | A. Sissis | Arthur Sissis | Mahindra Racing | Mahindra Racing | 1:51.992m | +2.626s | |
| 32 | P. Öttl | Philipp Öttl | Interwetten Pad | Interwetten Paddock Moto3 | 1:52.011m | +2.645s | |
| 33 | G. Ramos | Gabriel Ramos | Kiefer Racing | Kiefer Racing | 1:52.844m | +3.478s |
| Aragon GP | 26.09. - 28.09. | |
| Japan GP | 10.10. - 12.10. | |
| Phillip Island | 17.10. - 19.10. | |
| Sepang | 24.10. - 26.10. | |
| Valencia | 07.11. - 09.11. |