
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | J. Miller | Jack Miller | RB KTM Ajo | Red Bull KTM Ajo | 1:51.929m | 1:51.929m | |
| 2 | E. Vázquez | Efrén Vázquez | Peugeot MC Saxo | Peugeot MC Saxoprint | 1:52.662m | +0.733s | |
| 3 | D. Kent | Danny Kent | RB Husqvarna | Red Bull Husqvarna Ajo | 1:52.765m | +0.836s | |
| 4 | I. Viñales | Isaac Viñales | Team Calvo | Team Calvo | 1:53.050m | +1.121s | |
| 5 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:53.056m | +1.127s | |
| 6 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:53.163m | +1.234s | |
| 7 | E. Bastianini | Enea Bastianini | Junior GO&FUN | Junior Team GO&FUN Moto3 | 1:53.355m | +1.426s | |
| 8 | N. Antonelli | Niccolò Antonelli | Junior GO&FUN | Junior Team GO&FUN Moto3 | 1:53.360m | +1.431s | |
| 9 | J. Guevara | Juanfran Guevara | Aspar Team | CFMOTO Aspar Team | 1:53.434m | +1.505s | |
| 10 | J. Kornfeil | Jakub Kornfeil | Team Calvo | Team Calvo | 1:53.472m | +1.543s | |
| 11 | K. Hanika | Karel Hanika | RB KTM Ajo | Red Bull KTM Ajo | 1:53.634m | +1.705s | |
| 12 | J. McPhee | John McPhee | Peugeot MC Saxo | Peugeot MC Saxoprint | 1:53.828m | +1.899s | |
| 13 | L. Loi | Livio Loi | Marc VDS Racing | Marc VDS Racing Team | 1:53.923m | +1.994s | |
| 14 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 1:53.938m | +2.009s | |
| 15 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:54.035m | +2.106s | |
| 16 | R. Fenati | Romano Fenati | Sky Racing Team | Sky Racing Team VR46 | 1:54.090m | +2.161s | |
| 17 | A. Masbou | Alexis Masbou | Snipers Team | Rivacold Snipers Team | 1:54.113m | +2.184s | |
| 18 | A. Tonucci | Alessandro Tonucci | CIP-Green | CIP Green Power | 1:54.140m | +2.211s | |
| 19 | A. Locatelli | Andrea Locatelli | San Carlo Team | San Carlo Team Italia | 1:54.180m | +2.251s | |
| 20 | E. Granado | Eric Granado | Team Calvo | Team Calvo | 1:54.209m | +2.280s | |
| 21 | A. Carrasco | Ana Carrasco | RW Racing GP | RW Racing GP | 1:54.535m | +2.606s | |
| 22 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:54.699m | +2.770s | |
| 23 | H. Azmi | Hafiq Azmi | SIC-AJO | SIC-AJO | 1:54.822m | +2.893s | |
| 24 | L. Grünwald | Luca Grünwald | Kiefer Racing | Kiefer Racing | 1:55.121m | +3.192s | |
| 25 | J. Danilo | Jules Danilo | Ambrogio Racing | Ambrogio Racing | 1:55.282m | +3.353s | |
| 26 | M. Ferrari | Matteo Ferrari | San Carlo Team | San Carlo Team Italia | 1:55.298m | +3.369s | |
| 27 | F. Bagnaia | Francesco Bagnaia | Sky Racing Team | Sky Racing Team VR46 | 1:55.389m | +3.460s | |
| 28 | S. Deroue | Scott Deroue | RW Racing GP | RW Racing GP | 1:55.562m | +3.633s | |
| 29 | A. Sissis | Arthur Sissis | Mahindra Racing | Mahindra Racing | 1:55.590m | +3.661s | |
| 30 | Z. Khairuddin | Zulfahmi Khairuddin | Ongnetta-AirA | Ongnetta-AirAsia | 1:55.721m | +3.792s | |
| 31 | B. Schouten | Bryan Schouten | CIP-Green | CIP Green Power | 1:56.665m | +4.736s | |
| 32 | P. Öttl | Philipp Öttl | Interwetten Pad | Interwetten Paddock Moto3 | 1:57.448m | +5.519s | |
| 33 | G. Ramos | Gabriel Ramos | Kiefer Racing | Kiefer Racing | 1:58.673m | +6.744s |
| Aragon GP | 26.09. - 28.09. | |
| Japan GP | 10.10. - 12.10. | |
| Phillip Island | 17.10. - 19.10. | |
| Sepang | 24.10. - 26.10. | |
| Valencia | 07.11. - 09.11. |