
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | M. Viñales | Maverick Viñales | Team Calvo | Team Calvo | 2:17.308m | 2:17.308m | |
| 2 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 2:17.419m | +0.111s | |
| 3 | J. Miller | Jack Miller | Caretta RTG | Caretta Technology - RTG | 2:18.644m | +1.336s | |
| 4 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 2:18.698m | +1.390s | |
| 5 | J. Folger | Jonas Folger | Aspar Team | CFMOTO Aspar Team | 2:18.705m | +1.397s | |
| 6 | L. Salom | Luis Salom | RB KTM Ajo | Red Bull KTM Ajo | 2:18.916m | +1.608s | |
| 7 | D. Webb | Daniel Webb | Ambrogio Racing | Ambrogio Racing | 2:19.365m | +2.057s | |
| 8 | J. Iwema | Jasper Iwema | RW Racing GP | RW Racing GP | 2:19.541m | +2.233s | |
| 9 | Z. Khairuddin | Zulfahmi Khairuddin | RB KTM Ajo | Red Bull KTM Ajo | 2:19.619m | +2.311s | |
| 10 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 2:19.631m | +2.323s | |
| 11 | N. Antonelli | Niccolò Antonelli | GO&FUN Gresini | GO&FUN Gresini Moto3 | 2:19.648m | +2.340s | |
| 12 | J. Kornfeil | Jakub Kornfeil | Redox RW | Redox RW Racing GP | 2:19.658m | +2.350s | |
| 13 | R. Fenati | Romano Fenati | San Carlo Team | San Carlo Team Italia | 2:19.750m | +2.442s | |
| 14 | I. Viñales | Isaac Viñales | B-O-C Seta | Bimbo-Ongetta-Centro Seta | 2:19.790m | +2.482s | |
| 15 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 2:19.798m | +2.490s | |
| 16 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 2:19.822m | +2.514s | |
| 17 | E. Vázquez | Efrén Vázquez | Mahindra Racing | Mahindra Racing | 2:20.023m | +2.715s | |
| 18 | A. Sissis | Arthur Sissis | RB KTM Ajo | Red Bull KTM Ajo | 2:20.100m | +2.792s | |
| 19 | E. Granado | Eric Granado | Aspar Team | CFMOTO Aspar Team | 2:20.500m | +3.192s | |
| 20 | A. Masbou | Alexis Masbou | Ongetta-Ricavol | Ongetta-Ricavold | 2:20.733m | +3.425s | |
| 21 | A. Tonucci | Alessandro Tonucci | LF Tascaracing | La Fonte Tascaracing | 2:20.871m | +3.563s | |
| 22 | P. Öttl | Philipp Öttl | Paddock Motion | Paddock TT Motion | 2:20.935m | +3.627s | |
| 23 | F. Alt | Florian Alt | Kiefer Racing | Kiefer Racing | 2:20.949m | +3.641s | |
| 24 | A. Carrasco | Ana Carrasco | Team Calvo | Team Calvo | 2:21.077m | +3.769s | |
| 25 | T. Finsterbusch | Toni Finsterbusch | Kiefer Racing | Kiefer Racing | 2:21.273m | +3.965s | |
| 26 | M. Ferrari | Matteo Ferrari | Ongetta-Centro | Ongetta-Centro Seta | 2:21.385m | +4.077s | |
| 27 | J. McPhee | John McPhee | Caretta RTG | Caretta Technology - RTG | 2:21.406m | +4.098s | |
| 28 | A. Techer | Alan Techer | CIP-Green | CIP Green Power | 2:21.841m | +4.533s | |
| 29 | J. Guevara | Juanfran Guevara | CIP-Green | CIP Green Power | 2:22.433m | +5.125s | |
| 30 | L. Baldassarri | Lorenzo Baldassarri | GO&FUN Gresini | GO&FUN Gresini Moto3 | 2:22.697m | +5.389s | |
| 31 | F. Bagnaia | Francesco Bagnaia | San Carlo Team | San Carlo Team Italia | 2:24.403m | +7.095s | |
| 32 | H. Watanabe | Hyuga Watanabe | LF Tascaracing | La Fonte Tascaracing | DNF | DNF |
| Aragon GP | 27.09. - 29.09. | |
| Sepang | 11.10. - 13.10. | |
| Phillip Island | 18.10. - 20.10. | |
| Japan GP | 25.10. - 27.10. | |
| Valencia | 08.11. - 10.11. |