
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 1:58.788m | 1:58.788m | |
| 2 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 1:58.806m | +0.018s | |
| 3 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 1:58.885m | +0.097s | |
| 4 | J. Guevara | Juanfran Guevara | Aspar Team | CFMOTO Aspar Team | 1:58.932m | +0.144s | |
| 5 | E. Bastianini | Enea Bastianini | Junior GO&FUN | Junior Team GO&FUN Moto3 | 1:58.985m | +0.197s | |
| 6 | I. Viñales | Isaac Viñales | Team Calvo | Team Calvo | 1:59.142m | +0.354s | |
| 7 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 1:59.175m | +0.387s | |
| 8 | J. Kornfeil | Jakub Kornfeil | Team Calvo | Team Calvo | 1:59.179m | +0.391s | |
| 9 | D. Kent | Danny Kent | RB Husqvarna | Red Bull Husqvarna Ajo | 1:59.242m | +0.454s | |
| 10 | J. Miller | Jack Miller | RB KTM Ajo | Red Bull KTM Ajo | 1:59.355m | +0.567s | |
| 11 | J. McPhee | John McPhee | Peugeot MC Saxo | Peugeot MC Saxoprint | 1:59.411m | +0.623s | |
| 12 | N. Antonelli | Niccolò Antonelli | Junior GO&FUN | Junior Team GO&FUN Moto3 | 1:59.441m | +0.653s | |
| 13 | E. Vázquez | Efrén Vázquez | Peugeot MC Saxo | Peugeot MC Saxoprint | 1:59.497m | +0.709s | |
| 14 | R. Fenati | Romano Fenati | Sky Racing Team | Sky Racing Team VR46 | 1:59.772m | +0.984s | |
| 15 | F. Bagnaia | Francesco Bagnaia | Sky Racing Team | Sky Racing Team VR46 | 1:59.813m | +1.025s | |
| 16 | A. Migno | Andrea Migno | Mahindra Racing | Mahindra Racing | 1:59.933m | +1.145s | |
| 17 | A. Masbou | Alexis Masbou | Snipers Team | Rivacold Snipers Team | 1:59.956m | +1.168s | |
| 18 | K. Hanika | Karel Hanika | RB KTM Ajo | Red Bull KTM Ajo | 2:00.153m | +1.365s | |
| 19 | E. Granado | Eric Granado | Team Calvo | Team Calvo | 2:00.165m | +1.377s | |
| 20 | J. Navarro | Jorge Navarro | Marc VDS Racing | Marc VDS Racing Team | 2:00.242m | +1.454s | |
| 21 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 2:00.249m | +1.461s | |
| 22 | J. Iwema | Jasper Iwema | CIP-Green | CIP Green Power | 2:00.333m | +1.545s | |
| 23 | H. Ono | Hiroki Ono | Honda Team Asia | Honda Team Asia | 2:00.347m | +1.559s | |
| 24 | H. Azmi | Hafiq Azmi | SIC-AJO | SIC-AJO | 2:00.449m | +1.661s | |
| 25 | A. Tonucci | Alessandro Tonucci | CIP-Green | CIP Green Power | 2:00.462m | +1.674s | |
| 26 | M. Ferrari | Matteo Ferrari | San Carlo Team | San Carlo Team Italia | 2:00.684m | +1.896s | |
| 27 | Z. Khairuddin | Zulfahmi Khairuddin | Ongnetta-AirA | Ongnetta-AirAsia | 2:00.855m | +2.067s | |
| 28 | G. Rodrigo | Gabriel Rodrigo | BOE Owlride | BOE Owlride | 2:00.883m | +2.095s | |
| 29 | A. Locatelli | Andrea Locatelli | San Carlo Team | San Carlo Team Italia | 2:00.959m | +2.171s | |
| 30 | L. Grünwald | Luca Grünwald | Kiefer Racing | Kiefer Racing | 2:01.046m | +2.258s | |
| 31 | S. Deroue | Scott Deroue | RW Racing GP | RW Racing GP | 2:01.216m | +2.428s | |
| 32 | P. Öttl | Philipp Öttl | Interwetten Pad | Interwetten Paddock Moto3 | 2:01.274m | +2.486s | |
| 33 | A. Carrasco | Ana Carrasco | RW Racing GP | RW Racing GP | 2:01.562m | +2.774s | |
| 34 | J. Danilo | Jules Danilo | Ambrogio Racing | Ambrogio Racing | 2:01.766m | +2.978s | |
| 35 | G. Ramos | Gabriel Ramos | Kiefer Racing | Kiefer Racing | 2:02.109m | +3.321s |
| Aragon GP | 26.09. - 28.09. | |
| Japan GP | 10.10. - 12.10. | |
| Phillip Island | 17.10. - 19.10. | |
| Sepang | 24.10. - 26.10. | |
| Valencia | 07.11. - 09.11. |