
| Pos | Name | Fahrer | Team | Team | Zeit | Zeit | |
|---|---|---|---|---|---|---|---|
| 1 | R. Fenati | Romano Fenati | Sky Racing Team | Sky Racing Team VR46 | 40:52.209m | 40:52.209m | |
| 2 | Á. Márquez | Álex Márquez | Estrella Gal. | Estrella Galicia 0'0 | 40:52.266m | +0.057s | |
| 3 | D. Kent | Danny Kent | RB Husqvarna | Red Bull Husqvarna Ajo | 40:52.492m | +0.283s | |
| 4 | Á. Rins | Álex Rins | Estrella Gal. | Estrella Galicia 0'0 | 41:03.840m | +11.631s | |
| 5 | J. Kornfeil | Jakub Kornfeil | Team Calvo | Team Calvo | 41:10.591m | +18.382s | |
| 6 | E. Bastianini | Enea Bastianini | Junior GO&FUN | Junior Team GO&FUN Moto3 | 41:11.468m | +19.259s | |
| 7 | M. Oliveira | Miguel Oliveira | Mahindra Racing | Mahindra Racing | 41:15.915m | +23.706s | |
| 8 | B. Binder | Brad Binder | Ambrogio Racing | Ambrogio Racing | 41:16.982m | +24.773s | |
| 9 | N. Antonelli | Niccolò Antonelli | Junior GO&FUN | Junior Team GO&FUN Moto3 | 41:29.232m | +37.023s | |
| 10 | A. Masbou | Alexis Masbou | Snipers Team | Rivacold Snipers Team | 41:31.253m | +39.044s | |
| 11 | H. Ono | Hiroki Ono | Honda Team Asia | Honda Team Asia | 41:31.793m | +39.584s | |
| 12 | I. Viñales | Isaac Viñales | Team Calvo | Team Calvo | 41:54.224m | +1:02.015m | |
| 13 | E. Vázquez | Efrén Vázquez | Peugeot MC Saxo | Peugeot MC Saxoprint | 41:54.270m | +1:02.061m | |
| 14 | J. Danilo | Jules Danilo | Ambrogio Racing | Ambrogio Racing | 41:54.447m | +1:02.238m | |
| 15 | Z. Khairuddin | Zulfahmi Khairuddin | Ongnetta-AirA | Ongnetta-AirAsia | 41:57.477m | +1:05.268m | |
| 16 | J. Iwema | Jasper Iwema | CIP-Green | CIP Green Power | 41:57.491m | +1:05.282m | |
| 17 | E. Granado | Eric Granado | Team Calvo | Team Calvo | 41:58.695m | +1:06.486m | |
| 18 | A. Locatelli | Andrea Locatelli | San Carlo Team | San Carlo Team Italia | 42:04.283m | +1:12.074m | |
| 19 | H. Azmi | Hafiq Azmi | SIC-AJO | SIC-AJO | 42:14.039m | +1:21.830m | |
| 20 | G. Rodrigo | Gabriel Rodrigo | BOE Owlride | BOE Owlride | 42:17.335m | +1:25.126m | |
| 21 | G. Ramos | Gabriel Ramos | Kiefer Racing | Kiefer Racing | 42:17.451m | +1:25.242m | |
| 22 | A. Carrasco | Ana Carrasco | RW Racing GP | RW Racing GP | 42:27.253m | +1:35.044m | |
| 23 | K. Hanika | Karel Hanika | RB KTM Ajo | Red Bull KTM Ajo | 42:29.577m | +1:37.368m | |
| 24 | F. Bagnaia | Francesco Bagnaia | Sky Racing Team | Sky Racing Team VR46 | 41:35.056m | +42.847s | |
| 25 | N. Ajo | Niklas Ajo | Avant Tecno | Avant Tecno | 41:37.120m | +44.911s | |
| 26 | L. Grünwald | Luca Grünwald | Kiefer Racing | Kiefer Racing | 41:24.388m | +32.179s | |
| 27 | J. Miller | Jack Miller | RB KTM Ajo | Red Bull KTM Ajo | 41:40.090m | +47.881s | |
| 28 | J. McPhee | John McPhee | Peugeot MC Saxo | Peugeot MC Saxoprint | DNF | DNF | |
| 29 | A. Migno | Andrea Migno | Mahindra Racing | Mahindra Racing | DNF | DNF | |
| 30 | P. Öttl | Philipp Öttl | Interwetten Pad | Interwetten Paddock Moto3 | DNF | DNF | |
| 31 | J. Navarro | Jorge Navarro | Marc VDS Racing | Marc VDS Racing Team | DNF | DNF | |
| 32 | A. Tonucci | Alessandro Tonucci | CIP-Green | CIP Green Power | DNF | DNF | |
| 33 | J. Guevara | Juanfran Guevara | Aspar Team | CFMOTO Aspar Team | DNF | DNF | |
| 34 | S. Deroue | Scott Deroue | RW Racing GP | RW Racing GP | DNF | DNF | |
| 35 | M. Ferrari | Matteo Ferrari | San Carlo Team | San Carlo Team Italia | DNF | DNF |
| Aragon GP | 26.09. - 28.09. | |
| Japan GP | 10.10. - 12.10. | |
| Phillip Island | 17.10. - 19.10. | |
| Sepang | 24.10. - 26.10. | |
| Valencia | 07.11. - 09.11. |